Research workbench
Apo structure of tp domain from burkholderia pseudomallei penicillin- binding protein 3
Analyse Apo structure of tp domain from burkholderia pseudomallei penicillin- binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HZI
- Type
- protein
- Length
- 331 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidoglycan D,D-transpeptidase ftsi
- EC
- 3.4.16.4
- UniProt
- A0A069B4K9
- Pockets
- 3 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidoglycan D,D-transpeptidase ftsi (EC 3.4.16.4) | protein | 331 | 36% helix, 23% strand | A0A069B4K9 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 138 | 0.41 | 0.74 | 20 | empty |
| 2 | 65 | 0.31 | 0.75 | 16 | empty |
| 3 | 63 | 0.26 | 0.73 | 20 | empty |
Compared structures
- 6HZI · Apo structure of TP domain from Burkholderia pseudomallei penicillin-binding protein 3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A069B4K9
- Elsewhere: RCSB PDB 6HZI · PDBe 6HZI · UniProt A0A069B4K9
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