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Immature mlv capsid hexamer structure in intact virus particles

Analyse Immature mlv capsid hexamer structure in intact virus particles in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HWW
Type: protein
Length: 663 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative gag polyprotein
UniProt: Q9Q9A6
Pockets: 5 · best druggability 0.77

Structure

electron microscopy · 1 distinct chain · 67% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Putative gag polyprotein	protein	221	67% helix, 1% strand	Q9Q9A6

Pockets

5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1066	0.77	0.79	117	empty
2	492	0.71	0.81	65	empty
3	593	0.67	0.77	66	empty
4	371	0.66	0.80	57	empty
5	307	0.59	0.77	53	empty

Interfaces

3 interfaces between chains.

A–B · 272 Å² buried · 0 hydrogen bonds · protein-protein
B–C · 106 Å² buried · 0 hydrogen bonds · protein-protein
A–C · 35 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

6HWW · Immature MLV capsid hexamer structure in intact virus particles · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Q9A6
Elsewhere: RCSB PDB 6HWW · PDBe 6HWW · UniProt Q9Q9A6

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