Research workbench
Immature M-pmv capsid hexamer structure in intact virus particles
Analyse Immature M-pmv capsid hexamer structure in intact virus particles in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HWI
- Type
- protein
- Length
- 600 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gag-pro-pol polyprotein
- UniProt
- P07572
- Pockets
- 6 · best druggability 0.70
Structure
electron microscopy · 1 distinct chain · 62% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Gag-pro-pol polyprotein | protein | 200 | 62% helix, 0% strand | P07572 |
Pockets
6 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 498 | 0.70 | 0.80 | 70 | empty |
| 2 | 775 | 0.69 | 0.76 | 71 | empty |
| 3 | 467 | 0.68 | 0.80 | 78 | empty |
| 4 | 440 | 0.68 | 0.80 | 72 | empty |
| 5 | 292 | 0.53 | 0.75 | 50 | empty |
Interfaces
2 interfaces between chains.
- A–B · 360 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 31 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6HWI · Immature M-PMV capsid hexamer structure in intact virus particles · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07572
- Elsewhere: RCSB PDB 6HWI · PDBe 6HWI · UniProt P07572
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