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Crystal structure of patoxp, a cysteine protease-like domain of photorhabdus asymbiotica toxin patox

Analyse Crystal structure of patoxp, a cysteine protease-like domain of photorhabdus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HV6
Type: protein
Length: 293 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Toxin PAU_02230
EC: 2.4.1.-, 3.5.1.44
UniProt: C7BKP9
Pockets: 2 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 53% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Toxin PAU_02230 (EC 2.4.1.-, 3.5.1.44)	protein	293	53% helix, 16% strand	C7BKP9

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 6 copies · chains A
EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.31	0.76	18	empty
2	56	0.27	0.73	11	empty

Compared structures

6HV6 · Crystal structure of PatoxP, a cysteine protease-like domain of Photorhabdus asymbiotica… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7BKP9
Elsewhere: RCSB PDB 6HV6 · PDBe 6HV6 · UniProt C7BKP9

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