Research workbench
Crystal structure of the translation recovery factor trf from sulfolobus solfataricus
Analyse Crystal structure of the translation recovery factor trf from sulfolobus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HTJ
- Type
- protein
- Length
- 237 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleic-acid-binding protein containing a zn-ribbon
- UniProt
- A0A0E3M9E8
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleic-acid-binding protein containing a zn-ribbon | protein | 119 | 11% helix, 50% strand | A0A0E3M9E8 |
| B | Nucleic-acid-binding protein containing a zn-ribbon | protein | 118 | 11% helix, 50% strand | A0A0E3M9E8 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1085 | 0.76 | 0.78 | 61 | empty |
Interfaces
1 interface between chains.
- A–B · 854 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 6HTJ · Crystal structure of the translation recovery factor Trf from Sulfolobus solfataricus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0E3M9E8
- Elsewhere: RCSB PDB 6HTJ · PDBe 6HTJ · UniProt A0A0E3M9E8
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