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Crystal structure of the type III effector protein AVRRPT2 from erwinia amylovora, a C70 family cysteine protease
Analyse Crystal structure of the type III effector protein AVRRPT2 from erwinia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HQZ
- Type
- protein
- Length
- 308 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AVRRPT2
- UniProt
- A0A2U7NR52
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | AVRRPT2 | protein | 154 | 32% helix, 25% strand | A0A2U7NR52 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 277 | 0.61 | 0.80 | 29 | empty |
| 2 | 110 | 0.40 | 0.76 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 358 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6HQZ · Crystal structure of the type III effector protein AvrRpt2 from Erwinia amylovora, a C70… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2U7NR52
- Elsewhere: RCSB PDB 6HQZ · PDBe 6HQZ · UniProt A0A2U7NR52
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