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Structure of a protein capsid of the T59S mutant of phage MS2

Analyse Structure of a protein capsid of the T59S mutant of phage MS2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1MVB
Type: protein
Length: 387 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Bacteriophage MS2 capsid
UniProt: P03612
Pockets: 3 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 47% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Bacteriophage MS2 capsid	protein	129	19% helix, 47% strand	P03612

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1013	0.76	0.78	119	empty
2	119	0.37	0.74	26	empty
3	96	0.34	0.74	17	empty

Interfaces

3 interfaces between chains.

B–C · 560 Å² buried · 11 hydrogen bonds · protein-protein
A–B · 554 Å² buried · 5 hydrogen bonds · protein-protein
A–C · 523 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

1MVB · Structure of a protein capsid of the T59S mutant of phage MS2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03612
Elsewhere: RCSB PDB 1MVB · PDBe 1MVB · UniProt P03612

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