Research workbench

Crystal structure of loei river virus GP1 glycoprotein at pH 5.0

Analyse Crystal structure of loei river virus GP1 glycoprotein at pH 5.0 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HJ6
Type: protein
Length: 159 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pre-glycoprotein polyprotein gp complex
UniProt: A0A023J4Z7
Ligands: NAG
Pockets: 2 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pre-glycoprotein polyprotein gp complex	protein	159	21% helix, 31% strand	A0A023J4Z7

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	66	0.34	0.76	12	GOL
2	66	0.34	0.76	20	empty

Modifications

Observed in the structure: 5 glycan, 3 disulfide (N-glycosylation, disulfide).

Compared structures

6HJ6 · Crystal structure of Loei River virus GP1 glycoprotein at pH 5.0 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A023J4Z7
Elsewhere: RCSB PDB 6HJ6 · PDBe 6HJ6 · UniProt A0A023J4Z7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.