Research workbench
Complex of the periplasmic domains of bacterial cell division proteins ftsq and ftsb
Analyse Complex of the periplasmic domains of bacterial cell division proteins ftsq and… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H9O
- Type
- protein
- Length
- 439 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cell division protein ftsq; Cell division protein ftsb
- UniProt
- P06136, B7MKM2
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 3 distinct chains · 32% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cell division protein ftsq | protein | 196 | 31% helix, 35% strand | P06136 |
| B, D | Cell division protein ftsb | protein | 24 | 38% helix, 21% strand | B7MKM2 |
| C | Cell division protein ftsq | protein | 195 | 31% helix, 33% strand | P06136 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 54 | 0.29 | 0.75 | 13 | empty |
Interfaces
3 interfaces between chains.
- A–B · 878 Ų buried · 20 hydrogen bonds · protein-protein
- C–D · 827 Ų buried · 16 hydrogen bonds · protein-protein
- A–D · 95 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (nonstandard).
Compared structures
- 6H9O · Complex of the periplasmic domains of bacterial cell division proteins FtsQ and FtsB · the same entry in another collection · chain D against D, TM-score 1.00
- P06136 · AlphaFold monomer V2.0 prediction for cell division protein ftsq (P06136) · a predicted model of the same protein · chain A against A, TM-score 0.96
- B7MKM2 · AlphaFold monomer V2.0 prediction for cell division protein ftsb (B7MKM2) · a predicted model of the same protein · chain B against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P06136
- Every structure of UniProt B7MKM2
- Elsewhere: RCSB PDB 6H9O · PDBe 6H9O · UniProt P06136 · UniProt B7MKM2
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