Research workbench

Myxococcus xanthus mgla in complex with its gap mglb and gtpgammas

Analyse Myxococcus xanthus mgla in complex with its gap mglb and gtpgammas in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6H5B
Type: protein
Length: 442 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q1DB04, Q50883
Ligands: GSP, MG

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	190	—	Q1DB04
B	—	protein	129	—	Q50883
C	—	protein	123	—	Q50883

Ligands and binding sites

GSP · 5'-guanosine-diphosphate-monothiophosphate · ligand · chains A
MG · Magnesium ion · metal · chains A
PEG · Di(hydroxyethyl)ether · additive · 3 copies
EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · 2 copies · chains A
1PE · Pentaethylene glycol · additive · 2 copies · chains A, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6H5B · Myxococcus xanthus MglA in complex with its GAP MglB and GTPgammaS · the same entry in another collection · chain A against A, TM-score 1.00
Q1DB04 · AlphaFold monomer V2.0 prediction for mutual gliding-motility protein mgla (Q1DB04) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q1DB04
Every structure of UniProt Q50883
Elsewhere: RCSB PDB 6H5B · PDBe 6H5B · UniProt Q1DB04 · UniProt Q50883

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