Research workbench
Effector domain of pseudomonas aeruginosa VGRG2B
Analyse Effector domain of pseudomonas aeruginosa VGRG2B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H56
- Type
- protein
- Length
- 360 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Effector domain of pseudomonas aeruginosa VGRG2B
- UniProt
- Q9I6M7
- Ligands
- ZN
- Pockets
- 4 · best druggability 0.66
Structure
x-ray diffraction · 2 distinct chains · 54% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Effector domain of pseudomonas aeruginosa VGRG2B | protein | 181 | 55% helix, 5% strand | Q9I6M7 |
| B | Effector domain of pseudomonas aeruginosa VGRG2B | protein | 179 | 54% helix, 5% strand | Q9I6M7 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 356 | 0.66 | 0.80 | 42 | ZN |
| 2 | 402 | 0.65 | 0.78 | 42 | ZN |
| 3 | 91 | 0.37 | 0.75 | 17 | empty |
| 4 | 88 | 0.36 | 0.74 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 561 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I6M7
- Elsewhere: RCSB PDB 6H56 · PDBe 6H56 · UniProt Q9I6M7
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