Research workbench
Structural snapshots of the type 9 protein translocon
Analyse Structural snapshots of the type 9 protein translocon in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H3I
- Type
- protein
- Length
- 2,597 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein involved in gliding motility spra; Peptidyl-prolyl cis-trans isomerase; Porv
- EC
- 5.2.1.8
- UniProt
- A0A1M5G5I4, A5F9W9, A5FJM7
- Pockets
- 20 · best druggability 0.84
Structure
electron microscopy · 3 distinct chains · 8% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein involved in gliding motility spra | protein | 2124 | 8% helix, 27% strand | A0A1M5G5I4 |
| B | Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) | protein | 128 | 16% helix, 32% strand | A5F9W9 |
| F | Porv | protein | 345 | 6% helix, 39% strand | A5FJM7 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1072 | 0.84 | 0.85 | 108 | empty |
| 2 | 1075 | 0.81 | 0.83 | 127 | empty |
| 3 | 1150 | 0.78 | 0.80 | 108 | empty |
| 4 | 689 | 0.77 | 0.82 | 70 | empty |
| 5 | 552 | 0.74 | 0.82 | 70 | empty |
Interfaces
2 interfaces between chains.
- A–F · 4078 Ų buried · 37 hydrogen bonds · protein-protein
- A–B · 1152 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 6H3I · Structural snapshots of the Type 9 protein translocon · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1M5G5I4
- Every structure of UniProt A5F9W9
- Every structure of UniProt A5FJM7
- Elsewhere: RCSB PDB 6H3I · PDBe 6H3I · UniProt A0A1M5G5I4 · UniProt A5F9W9 · UniProt A5FJM7
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