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Crystal structure of protein MJ1004 from mathanocaldococcus jannaschii

Analyse Crystal structure of protein MJ1004 from mathanocaldococcus jannaschii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6H1W
Type: protein
Length: 415 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MJ1004
UniProt: Q58410
Pockets: 4 · best druggability 0.79

Structure

x-ray diffraction · 2 distinct chains · 55% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MJ1004	protein	205	55% helix, 17% strand	Q58410
B	MJ1004	protein	210	54% helix, 17% strand	Q58410

Pockets

4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	945	0.79	0.80	54	empty
2	517	0.75	0.83	57	empty
3	221	0.60	0.81	24	empty
4	200	0.53	0.77	23	empty

Interfaces

1 interface between chains.

A–B · 2303 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 14 modified (engineered).

Compared structures

6H1W · Crystal Structure of protein MJ1004 from Mathanocaldococcus jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
Q58410 · AlphaFold monomer V2.0 prediction for uncharacterized protein MJ1004 (Q58410) · a predicted model of the same protein · chain A against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q58410
Elsewhere: RCSB PDB 6H1W · PDBe 6H1W · UniProt Q58410

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