Research workbench

FLV1 flavodiiron core from synechocystis sp. PCC6803

Analyse FLV1 flavodiiron core from synechocystis sp. PCC6803 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6H0C
Type: protein
Length: 406 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative diflavin flavoprotein a 3
EC: 1.-.-.-
UniProt: P74373
Ligands: CL
Pockets: 2 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative diflavin flavoprotein a 3 (EC 1.-.-.-)	protein	406	39% helix, 24% strand	P74373

Ligands and binding sites

CL · Chloride ion · ion · chains A
FLC · Citrate anion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	312	0.73	0.86	53	FLC, CL
2	80	0.38	0.77	21	empty

Compared structures

6H0C · Flv1 flavodiiron core from Synechocystis sp. PCC6803 · the same entry in another collection · chain A against A, TM-score 1.00
P74373 · AlphaFold monomer V2.0 prediction for putative diflavin flavoprotein a 3 (P74373) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P74373
Elsewhere: RCSB PDB 6H0C · PDBe 6H0C · UniProt P74373

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