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First germn domain of the sporulation protein germ from bacillus subtilis

Analyse First germn domain of the sporulation protein germ from bacillus subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6GZ8
Type
protein
Length
133 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P39072
Ligands
NA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein133—P39072

Ligands and binding sites

  • NA · Sodium ion · metal · 11 copies · chains A
  • EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6GZ8 · First GerMN domain of the sporulation protein GerM from Bacillus subtilis · the same entry in another collection · chain A against A, TM-score 1.00
  • P39072 · AlphaFold monomer V2.0 prediction for spore germination protein germ (P39072) · a predicted model of the same protein · chain A against A, TM-score 0.99

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