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Crystal structure of glmm from staphylococcus aureus

Analyse Crystal structure of glmm from staphylococcus aureus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6GYZ
Type: protein
Length: 893 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoglucosamine mutase
EC: 5.4.2.10
UniProt: A0A0D6H967
Pockets: 8 · best druggability 0.56

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglucosamine mutase (EC 5.4.2.10)	protein	447	41% helix, 21% strand	A0A0D6H967
B	Phosphoglucosamine mutase (EC 5.4.2.10)	protein	446	39% helix, 21% strand	A0A0D6H967

Pockets

8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	263	0.56	0.77	39	empty
2	251	0.53	0.76	39	empty
3	126	0.50	0.80	18	empty
4	85	0.49	0.83	17	empty
5	78	0.48	0.83	18	empty

Interfaces

1 interface between chains.

A–B · 1455 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

6GYZ · Crystal structure of GlmM from Staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0D6H967
Elsewhere: RCSB PDB 6GYZ · PDBe 6GYZ · UniProt A0A0D6H967

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