Research workbench
Molybdenum storage protein without polymolybdate clusters and ATP
Analyse Molybdenum storage protein without polymolybdate clusters and ATP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GWV
- Type
- protein
- Length
- 4,608 residues
- Chains
- 18
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Molybdenum storage protein subunit beta; Molybdenum storage protein subunit alpha
- UniProt
- P84253, P84308
- Ligands
- ATP, SO4, CL
- Pockets
- 20 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 41% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, C, E, H, I, K, N, O, Q | Molybdenum storage protein subunit beta | protein | 268 | 40% helix, 15% strand | P84253 |
| A, D, F, G, J, L, M, P, R | Molybdenum storage protein subunit alpha | protein | 244 | 43% helix, 16% strand | P84308 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains B, A, O, P
- SO4 · Sulfate ion · ion · 10 copies · chains B, D, E, F, G, N, M, Q, R
- CL · Chloride ion · ion · chains M, P, R
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1194 | 0.83 | 0.84 | 160 | empty |
| 2 | 882 | 0.82 | 0.84 | 103 | empty |
| 3 | 967 | 0.80 | 0.82 | 92 | SO4 |
| 4 | 665 | 0.79 | 0.84 | 72 | empty |
| 5 | 266 | 0.77 | 0.90 | 39 | SO4 |
Interfaces
45 interfaces between chains.
- K–L · 2373 Ų buried · 19 hydrogen bonds · protein-protein
- Q–R · 2356 Ų buried · 19 hydrogen bonds · protein-protein
- N–M · 2346 Ų buried · 21 hydrogen bonds · protein-protein
- C–D · 2316 Ų buried · 18 hydrogen bonds · protein-protein
- B–A · 2297 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 6GWV · Molybdenum storage protein without polymolybdate clusters and ATP · the same entry in another collection · chain R against R, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P84253
- Every structure of UniProt P84308
- Elsewhere: RCSB PDB 6GWV · PDBe 6GWV · UniProt P84253 · UniProt P84308
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.