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Concanavalin B structure determined with data from the euxfel, the first mhz free electron laser
Analyse Concanavalin B structure determined with data from the euxfel, the first mhz… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GWA
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Concanavalin B
- UniProt
- P49347
- Pockets
- 2 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Concanavalin B | protein | 283 | 36% helix, 22% strand | P49347 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 92 | 0.45 | 0.80 | 22 | empty |
| 2 | 106 | 0.37 | 0.74 | 20 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 6GWA · Concanavalin B structure determined with data from the EuXFEL, the first MHz free… · the same entry in another collection · chain A against A, TM-score 1.00
- P49347 · AlphaFold monomer V2.0 prediction for concanavalin B (P49347) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49347
- Elsewhere: RCSB PDB 6GWA · PDBe 6GWA · UniProt P49347
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