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X-ray structure of the helicobacter pylori saba adhesin domain

Analyse X-ray structure of the helicobacter pylori saba adhesin domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6GW5
Type: protein
Length: 784 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative outer membrane protein
UniProt: Q9ZLB8
Pockets: 8 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 64% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative outer membrane protein	protein	393	64% helix, 5% strand	Q9ZLB8
B	Putative outer membrane protein	protein	391	65% helix, 6% strand	Q9ZLB8

Pockets

8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	450	0.73	0.83	72	empty
2	240	0.57	0.79	30	empty
3	171	0.51	0.78	20	empty
4	238	0.51	0.75	37	empty
5	260	0.50	0.74	38	empty

Interfaces

1 interface between chains.

A–B · 1437 Å² buried · 18 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6GW5 · X-ray structure of the Helicobacter pylori SabA adhesin domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ZLB8
Elsewhere: RCSB PDB 6GW5 · PDBe 6GW5 · UniProt Q9ZLB8

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