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Xylanase from penicillium simplicissimum, complex with xylose

Analyse Xylanase from penicillium simplicissimum, complex with xylose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1B3V
Type: protein
Length: 302 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein (xylanase)
EC: 3.2.1.8
UniProt: P56588
Ligands: XYP, XYS

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein (xylanase) (EC 3.2.1.8)	protein	302	43% helix, 19% strand	P56588

Ligands and binding sites

XYP · beta-D-xylopyranose · sugar · 3 copies · chains A
XYS · alpha-D-xylopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide, 1 modified (disulfide, cyclization).

Compared structures

1B3V · Xylanase from penicillium simplicissimum, complex with xylose · the same entry in another collection · chain A against A, TM-score 1.00
P56588 · AlphaFold monomer V2.0 prediction for endo-1,4-beta-xylanase (P56588) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P56588
Elsewhere: RCSB PDB 1B3V · PDBe 1B3V · UniProt P56588

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