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Crystal structure of the uperin-3.5 peptide from uperoleia mjobergii forming cross-alpha fibril
Analyse Crystal structure of the uperin-3.5 peptide from uperoleia mjobergii forming… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GS3
- Type
- protein
- Length
- 34 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uperin-3.5
- UniProt
- P82042
- Ligands
- K, SCN
Structure
x-ray diffraction · 1 distinct chain · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uperin-3.5 | protein | 17 | 71% helix, 0% strand | P82042 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 280 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6GS3 · Crystal Structure of the Uperin-3.5 peptide from Uperoleia mjobergii forming cross-alpha… · the same entry in another collection · chain A against A, TM-score 1.00
- P82042 · AlphaFold monomer V2.0 prediction for uperin-3.5 (P82042) · a predicted model of the same protein · chain A against A, TM-score 0.65
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P82042
- Elsewhere: RCSB PDB 6GS3 · PDBe 6GS3 · UniProt P82042
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