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Crystal structure of human transthyretin in complex with 2,4,5- trichlorophenoxyacetic acid (2,4,5-T)

Analyse Crystal structure of human transthyretin in complex with 2,4,5… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6GR7
Type: protein
Length: 232 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transthyretin
UniProt: P02766
Ligands: F52
Pockets: 2 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Transthyretin	protein	116	6% helix, 53% strand	P02766

Ligands and binding sites

F52 · 2-[2,4,5-tris(chloranyl)phenoxy]ethanoic acid · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.32	0.74	16	empty
2	53	0.29	0.76	13	empty

Interfaces

1 interface between chains.

A–B · 932 Å² buried · 22 hydrogen bonds · protein-protein

Compared structures

6GR7 · Crystal Structure Of Human Transthyretin in complex with 2,4,5-trichlorophenoxyacetic… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02766
Elsewhere: RCSB PDB 6GR7 · PDBe 6GR7 · UniProt P02766

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