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Crystal structure of the R-type bacteriocin sheath protein CD1363 from clostridium difficile in the pre-assembled state
Analyse Crystal structure of the R-type bacteriocin sheath protein CD1363 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GKW
- Type
- protein
- Length
- 351 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative phage xkdk-like protein
- UniProt
- Q18BN0
- Pockets
- 4 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative phage xkdk-like protein | protein | 351 | 41% helix, 20% strand | Q18BN0 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 339 | 0.69 | 0.82 | 53 | empty |
| 2 | 138 | 0.50 | 0.79 | 22 | empty |
| 3 | 59 | 0.40 | 0.80 | 16 | empty |
| 4 | 59 | 0.34 | 0.77 | 17 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 6GKW · Crystal structure of the R-type bacteriocin sheath protein CD1363 from Clostridium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q18BN0
- Elsewhere: RCSB PDB 6GKW · PDBe 6GKW · UniProt Q18BN0
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