Research workbench
Crystal structure of myxobacterial cytochrome P450 CYP267B1 in complex with myristic acid
Analyse Crystal structure of myxobacterial cytochrome P450 CYP267B1 in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GK6
- Type
- protein
- Length
- 403 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome P450 CYP267B1 protein
- EC
- 1.14.-.-
- UniProt
- A9ERX9
- Ligands
- HEM, MYR
- Pockets
- 4 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 57% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome P450 CYP267B1 protein (EC 1.14.-.-) | protein | 403 | 57% helix, 8% strand | A9ERX9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1017 | 0.87 | 0.88 | 86 | HEM, MYR |
| 2 | 72 | 0.41 | 0.79 | 18 | empty |
| 3 | 111 | 0.39 | 0.75 | 20 | empty |
| 4 | 56 | 0.33 | 0.77 | 17 | empty |
Compared structures
- 6GK6 · Crystal structure of myxobacterial cytochrome P450 CYP267B1 in complex with myristic acid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9ERX9
- Elsewhere: RCSB PDB 6GK6 · PDBe 6GK6 · UniProt A9ERX9
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