Research workbench
Crystal structure of glutathione transferase omega 2S from trametes versicolor in complex with oxyresveratrol
Analyse Crystal structure of glutathione transferase omega 2S from trametes versicolor… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GIC
- Type
- protein
- Length
- 466 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutathione transferase omega 2S
- Ligands
- EZE, EZH, MG
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 2 distinct chains · 57% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutathione transferase omega 2S | protein | 229 | 58% helix, 8% strand | — |
| B | Glutathione transferase omega 2S | protein | 237 | 57% helix, 9% strand | — |
Ligands and binding sites
- EZE · trans-oxyresveratrol · ligand · chains B
- EZH · cis-oxyresveratrol · ligand · chains A, B
- MG · Magnesium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 901 | 0.78 | 0.80 | 89 | EZE, EZH |
| 2 | 181 | 0.49 | 0.76 | 22 | empty |
| 3 | 56 | 0.47 | 0.85 | 18 | empty |
| 4 | 152 | 0.46 | 0.76 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1033 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6GIC · Crystal structure of glutathione transferase Omega 2S from Trametes versicolor in complex… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6GIC · PDBe 6GIC
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