Research workbench
Crystal structure of salmonella zinc metalloprotease effector gtga
Analyse Crystal structure of salmonella zinc metalloprotease effector gtga in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GGO
- Type
- protein
- Length
- 397 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bacteriophage virulence determinant
- UniProt
- A0A0F6AZI6
- Ligands
- ZN, CL
- Pockets
- 5 · best druggability 0.48
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Bacteriophage virulence determinant | protein | 198 | 42% helix, 12% strand | A0A0F6AZI6 |
| A | Bacteriophage virulence determinant | protein | 199 | 42% helix, 11% strand | A0A0F6AZI6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.48 | 0.76 | 26 | empty |
| 2 | 112 | 0.43 | 0.77 | 23 | ZN, CL |
| 3 | 149 | 0.42 | 0.75 | 26 | CL |
| 4 | 124 | 0.39 | 0.75 | 21 | empty |
| 5 | 66 | 0.36 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- B–A · 417 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6GGO · Crystal structure of Salmonella zinc metalloprotease effector GtgA · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F6AZI6
- Elsewhere: RCSB PDB 6GGO · PDBe 6GGO · UniProt A0A0F6AZI6
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