Research workbench
Solution structures of the I-motif tetramers of D(TCC), D(5MCCT) and D(T5MCC). novel noe connections between amino protons and sugar protons
Analyse Solution structures of the I-motif tetramers of D(TCC), D(5MCCT) and D(T5MCC).… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 106D
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 4
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*MCYP*CP*T)-3')
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA (5'-D(*MCYP*CP*T)-3') | dna | 3 | — | — |
Interfaces
6 interfaces between chains.
- C–D · 298 Ų buried · 9 hydrogen bonds · nucleic-nucleic
- A–B · 282 Ų buried · 6 hydrogen bonds · nucleic-nucleic
- A–D · 249 Ų buried · 10 hydrogen bonds · nucleic-nucleic
- B–C · 226 Ų buried · 9 hydrogen bonds · nucleic-nucleic
- A–C · 133 Ų buried · 11 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 4 modified (nucleotide modification).
Compared structures
- 106D · Solution structures of the i-motif tetramers of D(TCC), D(5MCCT) and D(T5MCC). Novel NOE… · the same entry in another collection · chain A against A, TM-score 1.00
- 106D · Solution structures of the i-motif tetramers of D(TCC), D(5MCCT) and D(T5MCC). Novel NOE… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 106D · PDBe 106D
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