Research workbench
Feii-dependent halogenase wi-WELO15
Analyse Feii-dependent halogenase wi-WELO15 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GEM
- Type
- protein
- Length
- 1,120 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oxidoreductase
- UniProt
- A0A075X7F9
- Ligands
- AKG, FE
- Pockets
- 15 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Oxidoreductase | protein | 280 | 32% helix, 25% strand | A0A075X7F9 |
Ligands and binding sites
- AKG · 2-oxoglutaric acid · ligand · 4 copies · chains A, B, C, D
- FE · Fe (III) ion · metal · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 444 | 0.72 | 0.82 | 50 | FE, AKG |
| 2 | 449 | 0.72 | 0.82 | 42 | FE, AKG |
| 3 | 442 | 0.71 | 0.81 | 40 | FE, AKG |
| 4 | 362 | 0.70 | 0.82 | 42 | FE, AKG |
| 5 | 298 | 0.69 | 0.83 | 66 | empty |
Interfaces
3 interfaces between chains.
- B–C · 971 Ų buried · 17 hydrogen bonds · protein-protein
- A–D · 969 Ų buried · 17 hydrogen bonds · protein-protein
- A–C · 605 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6GEM · FeII-Dependent Halogenase Wi-WelO15 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A075X7F9
- Elsewhere: RCSB PDB 6GEM · PDBe 6GEM · UniProt A0A075X7F9
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