Research workbench
Structure of cuta from synechococcus elongatus PCC7942
Analyse Structure of cuta from synechococcus elongatus PCC7942 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GDU
- Type
- protein
- Length
- 327 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic divalent cation tolerance protein
- UniProt
- Q31KX8
- Pockets
- 4 · best druggability 0.86
Structure
x-ray diffraction · 3 distinct chains · 33% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic divalent cation tolerance protein | protein | 112 | 33% helix, 40% strand | Q31KX8 |
| B | Periplasmic divalent cation tolerance protein | protein | 108 | 34% helix, 42% strand | Q31KX8 |
| C | Periplasmic divalent cation tolerance protein | protein | 107 | 33% helix, 42% strand | Q31KX8 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 324 | 0.86 | 0.96 | 36 | empty |
| 2 | 102 | 0.57 | 0.84 | 14 | empty |
| 3 | 117 | 0.56 | 0.83 | 21 | empty |
| 4 | 85 | 0.49 | 0.82 | 14 | empty |
Interfaces
3 interfaces between chains.
- A–C · 1150 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 1031 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 1012 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 6GDU · Structure of CutA from Synechococcus elongatus PCC7942 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q31KX8
- Elsewhere: RCSB PDB 6GDU · PDBe 6GDU · UniProt Q31KX8
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