Research workbench
Murine protein tyrosine phosphatase PTPN13 PDZ3 domain
Analyse Murine protein tyrosine phosphatase PTPN13 PDZ3 domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GBD
- Type
- protein
- Length
- 119 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- PDZ3
- UniProt
- Q64512
- Pockets
- 2 · best druggability 0.72
Structure
solution nmr · 1 distinct chain · 9% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PDZ3 | protein | 119 | 9% helix, 20% strand | Q64512 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 221 | 0.72 | 0.88 | 40 | empty |
| 2 | 120 | 0.46 | 0.78 | 26 | empty |
Compared structures
- 6GBD · Murine Protein Tyrosine Phosphatase PTPN13 PDZ3 Domain · the same entry in another collection · chain A against A, TM-score 1.00
- Q64512 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase non-receptor type 13… · a predicted model of the same protein · chain A against A, TM-score 0.68
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q64512
- Elsewhere: RCSB PDB 6GBD · PDBe 6GBD · UniProt Q64512
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