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A fast recovering full-length lov protein (dslov) from the marine phototrophic bacterium dinoroseobacter shibae (dark state) - M49A mutant
Analyse A fast recovering full-length lov protein (dslov) from the marine phototrophic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GBA
- Type
- protein
- Length
- 120 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative blue-light photoreceptor
- UniProt
- A8LP63
- Ligands
- FMN
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 27% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative blue-light photoreceptor | protein | 120 | 27% helix, 33% strand | A8LP63 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.69 | 0.87 | 26 | FMN |
Compared structures
- 6GBA · A fast recovering full-length LOV protein (DsLOV) from the marine phototrophic bacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8LP63
- Elsewhere: RCSB PDB 6GBA · PDBe 6GBA · UniProt A8LP63
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