Research workbench
Structure of H-2DB with scoop loop from tapasin
Analyse Structure of H-2DB with scoop loop from tapasin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GB7
- Type
- protein
- Length
- 1,520 residues
- Chains
- 14
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01899, P01887
- Ligands
- SO4
Structure
x-ray diffraction · 9 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 271 | — | P01899 |
| B, D, H | — | protein | 100 | — | P01887 |
| C | — | protein | 273 | — | P01899 |
| E | — | protein | 270 | — | P01899 |
| F | — | protein | 99 | — | P01887 |
| G | — | protein | 270 | — | P01899 |
| I, J, K, L | — | protein | 7 | — | — |
| P | — | protein | 4 | — | — |
| R | — | protein | 5 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B, C, F, G
- GOL · Glycerol · additive · 11 copies · chains A, B, C, D, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6GB7 · Structure of H-2Db with scoop loop from tapasin · the same entry in another collection · chain R against R, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01899
- Every structure of UniProt P01887
- Elsewhere: RCSB PDB 6GB7 · PDBe 6GB7 · UniProt P01899 · UniProt P01887
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