Research workbench
Structure of MET1 from mycobacterium hassiacum in complex with SAM and glycerol.
Analyse Structure of MET1 from mycobacterium hassiacum in complex with SAM and glycerol. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6G7D
- Type
- protein
- Length
- 220 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methyltransferase domain protein
- UniProt
- K5B7F3
- Ligands
- SAH, MG, CL
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Methyltransferase domain protein | protein | 220 | 39% helix, 21% strand | K5B7F3 |
Ligands and binding sites
- SAH · S-adenosyl-L-homocysteine · ligand · chains A
- MG · Magnesium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 277 | 0.65 | 0.82 | 51 | SAH, GOL, CL |
Compared structures
- 6G7D · Structure of MeT1 from Mycobacterium hassiacum in complex with SAM and glycerol. · the same entry in another collection · chain A against A, TM-score 1.00
- K5B7F3 · AlphaFold monomer V2.0 prediction for mmp 1-O-methyltransferase (K5B7F3) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K5B7F3
- Elsewhere: RCSB PDB 6G7D · PDBe 6G7D · UniProt K5B7F3
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