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NT2 domain of the tssa component from the type VI secretion system of aeromonas hydrophila.

Analyse NT2 domain of the tssa component from the type VI secretion system of aeromonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6G7B
Type: protein
Length: 584 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Impa-related domain protein
UniProt: A0KJC7
Pockets: 14 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 66% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
D, B, A, C	Impa-related domain protein	protein	146	66% helix, 2% strand	A0KJC7

Pockets

14 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	183	0.59	0.82	21	empty
2	179	0.59	0.82	21	empty
3	197	0.59	0.81	21	empty
4	169	0.56	0.81	21	empty
5	129	0.44	0.77	15	empty

Interfaces

3 interfaces between chains.

B–A · 689 Å² buried · 4 hydrogen bonds · protein-protein
D–C · 660 Å² buried · 2 hydrogen bonds · protein-protein
A–C · 143 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

6G7B · Nt2 domain of the TssA component from the type VI secretion system of Aeromonas… · the same entry in another collection · chain D against D, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0KJC7
Elsewhere: RCSB PDB 6G7B · PDBe 6G7B · UniProt A0KJC7

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