Research workbench
Crystal structure of native edds lyase
Analyse Crystal structure of native edds lyase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6G3D
- Type
- protein
- Length
- 496 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Argininosuccinate lyase
- UniProt
- Q11KV9
- Pockets
- 5 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 69% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Argininosuccinate lyase | protein | 496 | 69% helix, 5% strand | Q11KV9 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 183 | 0.53 | 0.79 | 22 | empty |
| 2 | 70 | 0.41 | 0.80 | 17 | empty |
| 3 | 81 | 0.36 | 0.76 | 16 | empty |
| 4 | 68 | 0.32 | 0.75 | 19 | empty |
| 5 | 51 | 0.27 | 0.74 | 11 | empty |
Compared structures
- 6G3D · Crystal structure of Native EDDS lyase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q11KV9
- Elsewhere: RCSB PDB 6G3D · PDBe 6G3D · UniProt Q11KV9
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