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Structure of coproheme decarboxylase from listeria monocytogenes in complex with iron coproporphyrin III

Analyse Structure of coproheme decarboxylase from listeria monocytogenes in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6FXJ
Type: protein
Length: 1,213 residues
Chains: 5
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q8Y5F1
Ligands: FEC, NA, CL

Structure

x-ray diffraction · 5 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	251	—	Q8Y5F1
B	—	protein	237	—	Q8Y5F1
C	—	protein	237	—	Q8Y5F1
D	—	protein	250	—	Q8Y5F1
E	—	protein	238	—	Q8Y5F1

Ligands and binding sites

FEC · 1,3,5,8-tetramethyl-porphine-2,4,6,7-tetrapropionic acid ferrous complex · ligand · 5 copies · chains A, B, C, D, E
NA · Sodium ion · metal · 7 copies · chains A, B, C, E, D
CL · Chloride ion · ion · chains D
POL · N-propanol · additive · 10 copies · chains B, C, D, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6FXJ · Structure of coproheme decarboxylase from Listeria monocytogenes in complex with iron… · the same entry in another collection · chain E against E, TM-score 1.00
Q8Y5F1 · AlphaFold monomer V2.0 prediction for coproheme decarboxylase (Q8Y5F1) · a predicted model of the same protein · chain C against A, TM-score 0.99

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Every structure of UniProt Q8Y5F1
Elsewhere: RCSB PDB 6FXJ · PDBe 6FXJ · UniProt Q8Y5F1

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