Research workbench
The X-ray structure of the ferritin nanocage containing au and pt, obtained upon encapsulation of a single heterobimetallic compound within the protein cage (rotating anode data)
Analyse The X-ray structure of the ferritin nanocage containing au and pt, obtained… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FX8
- Type
- protein
- Length
- 172 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin light chain
- UniProt
- P02791
- Ligands
- CD, AU, CL, SO4
- Pockets
- 2 · best druggability 0.43
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ferritin light chain | protein | 172 | 77% helix, 0% strand | P02791 |
Ligands and binding sites
- CD · Cadmium ion · metal · 13 copies · chains A
- AU · Gold ion · metal · chains A
- CL · Chloride ion · ion · 3 copies · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.43 | 0.79 | 15 | empty |
| 2 | 57 | 0.31 | 0.75 | 16 | empty |
Compared structures
- 6FX8 · The X-ray structure of the ferritin nanocage containing Au and Pt, obtained upon… · the same entry in another collection · chain A against A, TM-score 1.00
- P02791 · AlphaFold monomer V2.0 prediction for ferritin light chain (P02791) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02791
- Elsewhere: RCSB PDB 6FX8 · PDBe 6FX8 · UniProt P02791
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