Research workbench
Structure of a manno-oligosaccharide specific solute binding protein, BLMNBP2 from bifidobacterium animalis subsp. lactis atcc 27673 in complex with mannotriose
Analyse Structure of a manno-oligosaccharide specific solute binding protein, BLMNBP2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FUV
- Type
- protein
- Length
- 427 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Solute binding protein, BLMNBP1 in complex with mannotriose
- Ligands
- BMA
- Pockets
- 2 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Solute binding protein, BLMNBP1 in complex with mannotriose | protein | 427 | 41% helix, 16% strand | — |
Ligands and binding sites
- BMA · beta-D-mannopyranose · sugar · 3 copies · chains A
- PGE · Triethylene glycol · additive · 4 copies · chains A
- P33 · 3,6,9,12,15,18-hexaoxaicosane-1,20-diol · additive · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1008 | 0.84 | 0.85 | 81 | BMA, P33 |
| 2 | 61 | 0.29 | 0.74 | 12 | empty |
Compared structures
- 6FUV · Structure of a manno-oligosaccharide specific solute binding protein, BlMnBP2 from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6FUV · PDBe 6FUV
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