Research workbench
Hmo binding ABC-transporter associated solute binding protein, BLON_2347 from bifidobacterium longum infantis atcc 15697
Analyse Hmo binding ABC-transporter associated solute binding protein, BLON_2347 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FTH
- Type
- protein
- Length
- 496 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular solute-binding protein, family 1
- UniProt
- B7GNP9
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular solute-binding protein, family 1 | protein | 496 | 49% helix, 16% strand | B7GNP9 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 847 | 0.72 | 0.77 | 87 | empty |
| 2 | 146 | 0.46 | 0.76 | 21 | empty |
| 3 | 56 | 0.44 | 0.83 | 16 | empty |
Compared structures
- 6FTH · HMO binding ABC-transporter associated Solute Binding Protein, Blon_2347 From… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7GNP9
- Elsewhere: RCSB PDB 6FTH · PDBe 6FTH · UniProt B7GNP9
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