Research workbench
Structure of the mannose transporter iia domain from streptococcus pneumoniae
Analyse Structure of the mannose transporter iia domain from streptococcus pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FMG
- Type
- protein
- Length
- 560 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pts system mannose-specific transporter subunit iiab
- EC
- 2.7.1.69
- UniProt
- A0A0T8BTT4
- Pockets
- 4 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Pts system mannose-specific transporter subunit iiab (EC 2.7.1.69) | protein | 140 | 49% helix, 19% strand | A0A0T8BTT4 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 304 | 0.61 | 0.79 | 35 | empty |
| 2 | 268 | 0.59 | 0.79 | 40 | empty |
| 3 | 75 | 0.39 | 0.79 | 12 | empty |
| 4 | 63 | 0.33 | 0.77 | 14 | empty |
Interfaces
5 interfaces between chains.
- A–D · 1875 Ų buried · 23 hydrogen bonds · protein-protein
- B–C · 1857 Ų buried · 28 hydrogen bonds · protein-protein
- A–C · 638 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 193 Ų buried · 2 hydrogen bonds · protein-protein
- C–D · 171 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6FMG · Structure of the Mannose Transporter IIA Domain from Streptococcus pneumoniae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0T8BTT4
- Elsewhere: RCSB PDB 6FMG · PDBe 6FMG · UniProt A0A0T8BTT4
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