Research workbench
RPN11 homolog from caldiarchaeum subterraneum
Analyse RPN11 homolog from caldiarchaeum subterraneum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6FJU
- Type
- protein
- Length
- 349 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 26S proteasome regulatory subunit N11-like protein
- UniProt
- E6N8B9
- Ligands
- ZN, SO4
- Pockets
- 6 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 26S proteasome regulatory subunit N11-like protein | protein | 176 | 39% helix, 28% strand | E6N8B9 |
| B | 26S proteasome regulatory subunit N11-like protein | protein | 173 | 39% helix, 28% strand | E6N8B9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.49 | 0.81 | 19 | empty |
| 2 | 101 | 0.41 | 0.77 | 18 | empty |
| 3 | 128 | 0.40 | 0.74 | 19 | empty |
| 4 | 111 | 0.39 | 0.75 | 23 | empty |
| 5 | 85 | 0.37 | 0.76 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1342 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 6FJU · Rpn11 homolog from Caldiarchaeum Subterraneum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E6N8B9
- Elsewhere: RCSB PDB 6FJU · PDBe 6FJU · UniProt E6N8B9
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