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Crystal structure of the amyloid-like, out-of-register beta-sheets, polymorph of the lfkffk segment from the S. aureus PSMALPHA3

Analyse Crystal structure of the amyloid-like, out-of-register beta-sheets, polymorph… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6FHD
Type
protein
Length
12 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Psm alpha-3
UniProt
H9BRQ7
Ligands
NA, SO4

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 50% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
B, APsm alpha-3protein60% helix, 50% strandH9BRQ7

Ligands and binding sites

  • NA · Sodium ion · metal · chains B, A
  • SO4 · Sulfate ion · ion · 2 copies · chains B, A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • B–A · 326 Ų buried · 8 hydrogen bonds · protein-protein

Compared structures

  • 6FHD · Crystal Structure of the Amyloid-like, out-of-register beta-sheets, polymorph of the… · the same entry in another collection · chain B against B, TM-score 1.00

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