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Crystal structure of GNIP1AA from chromobacterium piscinae

Analyse Crystal structure of GNIP1AA from chromobacterium piscinae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6FBM
Type: protein
Length: 2,084 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Gram-negative insecticidal protein
UniProt: A0A140EEF9
Pockets: 12 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 26% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Gram-negative insecticidal protein	protein	521	26% helix, 33% strand	A0A140EEF9

Pockets

12 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	591	0.69	0.78	85	empty
2	575	0.68	0.78	63	empty
3	514	0.65	0.77	61	empty
4	171	0.43	0.74	28	empty
5	59	0.36	0.79	14	empty

Interfaces

4 interfaces between chains.

C–D · 776 Å² buried · 7 hydrogen bonds · protein-protein
A–D · 647 Å² buried · 10 hydrogen bonds · protein-protein
B–C · 500 Å² buried · 7 hydrogen bonds · protein-protein
A–B · 155 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

6FBM · Crystal structure of GNIP1Aa from Chromobacterium piscinae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A140EEF9
Elsewhere: RCSB PDB 6FBM · PDBe 6FBM · UniProt A0A140EEF9

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