Research workbench
Antitoxin graa
Analyse Antitoxin graa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6F8H
- Type
- protein
- Length
- 377 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xre family transcriptional regulator
- UniProt
- A0A179R2V1
- Pockets
- 2 · best druggability 0.65
Structure
x-ray diffraction · 3 distinct chains · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xre family transcriptional regulator | protein | 96 | 70% helix, 0% strand | A0A179R2V1 |
| B, D | Xre family transcriptional regulator | protein | 94 | 69% helix, 0% strand | A0A179R2V1 |
| C | Xre family transcriptional regulator | protein | 93 | 72% helix, 0% strand | A0A179R2V1 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 737 | 0.65 | 0.74 | 82 | empty |
| 2 | 71 | 0.30 | 0.73 | 14 | empty |
Interfaces
3 interfaces between chains.
- A–C · 199 Ų buried · 2 hydrogen bonds · protein-protein
- A–D · 189 Ų buried · 1 hydrogen bond · protein-protein
- B–C · 157 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6F8H · antitoxin GraA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A179R2V1
- Elsewhere: RCSB PDB 6F8H · PDBe 6F8H · UniProt A0A179R2V1
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