Research workbench
Crystal structure of ketosteroid isomerase variant D103S
Analyse Crystal structure of ketosteroid isomerase variant D103S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6F4Y
- Type
- protein
- Length
- 250 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Steroid delta-isomerase
- EC
- 5.3.3.1
- UniProt
- P07445
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Steroid delta-isomerase (EC 5.3.3.1) | protein | 125 | 30% helix, 38% strand | P07445 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 222 | 0.63 | 0.82 | 33 | empty |
| 2 | 207 | 0.61 | 0.81 | 24 | empty |
| 3 | 69 | 0.35 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1102 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 6F4Y · Crystal structure of ketosteroid isomerase variant D103S · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07445
- Elsewhere: RCSB PDB 6F4Y · PDBe 6F4Y · UniProt P07445
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