Research workbench

Crystal structure of mouse SALM5 adhesion protein extracellular lrr-ig domain fragment

Analyse Crystal structure of mouse SALM5 adhesion protein extracellular lrr-ig domain… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6F2O
Type: protein
Length: 330 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Leucine-rich repeat and fibronectin type-III domain- containing protein 5
UniProt: Q8BXA0
Pockets: 2 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Leucine-rich repeat and fibronectin type-III domain- containing protein 5	protein	330	6% helix, 27% strand	Q8BXA0

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	200	0.65	0.84	31	empty
2	76	0.48	0.83	25	empty

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

6F2O · Crystal structure of mouse SALM5 adhesion protein extracellular LRR-Ig domain fragment · the same entry in another collection · chain A against A, TM-score 1.00
Q8BXA0 · AlphaFold monomer V2.0 prediction for leucine-rich repeat and fibronectin type-III… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8BXA0
Elsewhere: RCSB PDB 6F2O · PDBe 6F2O · UniProt Q8BXA0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.