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Crystal structure of the salmonella effector SSEK3

Analyse Crystal structure of the salmonella effector SSEK3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6EYR
Type: protein
Length: 610 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type III secretion system effector protein
UniProt: A0A0H3NMP8
Pockets: 3 · best druggability 0.43

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Type III secretion system effector protein	protein	307	40% helix, 22% strand	A0A0H3NMP8
B	Type III secretion system effector protein	protein	303	39% helix, 22% strand	A0A0H3NMP8

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	158	0.43	0.75	21	empty
2	133	0.41	0.74	22	empty
3	84	0.36	0.76	18	empty

Interfaces

1 interface between chains.

A–B · 24 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

6EYR · Crystal structure of the salmonella effector SseK3 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0H3NMP8
Elsewhere: RCSB PDB 6EYR · PDBe 6EYR · UniProt A0A0H3NMP8

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