Research workbench
Chemotaxis protein chey from pyrococcus horikoshii
Analyse Chemotaxis protein chey from pyrococcus horikoshii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6EXR
- Type
- protein
- Length
- 698 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 120AA long hypothetical chemotaxis protein (chey)
- UniProt
- O58193
- Pockets
- 3 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, D, F | 120AA long hypothetical chemotaxis protein (chey) | protein | 117 | 47% helix, 21% strand | O58193 |
| C, E | 120AA long hypothetical chemotaxis protein (chey) | protein | 115 | 48% helix, 20% strand | O58193 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 241 | 0.60 | 0.80 | 34 | empty |
| 2 | 94 | 0.42 | 0.78 | 21 | empty |
| 3 | 113 | 0.33 | 0.71 | 19 | empty |
Interfaces
6 interfaces between chains.
- A–F · 2642 Ų buried · 15 hydrogen bonds · protein-protein
- B–D · 2537 Ų buried · 20 hydrogen bonds · protein-protein
- A–D · 389 Ų buried · 3 hydrogen bonds · protein-protein
- D–E · 208 Ų buried · 1 hydrogen bond · protein-protein
- D–F · 157 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6EXR · CHEMOTAXIS PROTEIN CHEY FROM Pyrococcus horikoshiI · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58193
- Elsewhere: RCSB PDB 6EXR · PDBe 6EXR · UniProt O58193
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.