Research workbench
Putative sugar aminotransferase SPR1654 from streptococcus pneumoniae, apo-form
Analyse Putative sugar aminotransferase SPR1654 from streptococcus pneumoniae, apo-form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6EWJ
- Type
- protein
- Length
- 1,596 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative capsular polysaccharide biosynthesis protein
- UniProt
- A0A0H2URM1
- Pockets
- 17 · best druggability 0.79
Structure
x-ray diffraction · 4 distinct chains · 43% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative capsular polysaccharide biosynthesis protein | protein | 399 | 43% helix, 16% strand | A0A0H2URM1 |
| D | Putative capsular polysaccharide biosynthesis protein | protein | 401 | 43% helix, 16% strand | A0A0H2URM1 |
| C | Putative capsular polysaccharide biosynthesis protein | protein | 398 | 43% helix, 17% strand | A0A0H2URM1 |
| B | Putative capsular polysaccharide biosynthesis protein | protein | 398 | 43% helix, 17% strand | A0A0H2URM1 |
Pockets
17 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.79 | 0.95 | 24 | empty |
| 2 | 797 | 0.75 | 0.79 | 78 | empty |
| 3 | 76 | 0.74 | 0.98 | 24 | empty |
| 4 | 71 | 0.74 | 0.98 | 22 | empty |
| 5 | 631 | 0.74 | 0.80 | 72 | empty |
Interfaces
6 interfaces between chains.
- D–C · 2601 Ų buried · 31 hydrogen bonds · protein-protein
- A–B · 2561 Ų buried · 30 hydrogen bonds · protein-protein
- D–B · 202 Ų buried · 1 hydrogen bond · protein-protein
- A–D · 155 Ų buried · 2 hydrogen bonds · protein-protein
- C–B · 128 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 6EWJ · Putative sugar aminotransferase Spr1654 from Streptococcus pneumoniae, apo-form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H2URM1
- Elsewhere: RCSB PDB 6EWJ · PDBe 6EWJ · UniProt A0A0H2URM1
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