Research workbench
Ruminococcus gnavus it-sialidase CBM40
Analyse Ruminococcus gnavus it-sialidase CBM40 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6ER2
- Type
- protein
- Length
- 368 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BNR/ASP-box repeat protein
- UniProt
- A7B557
- Pockets
- 1 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BNR/ASP-box repeat protein | protein | 184 | 8% helix, 48% strand | A7B557 |
| B | BNR/ASP-box repeat protein | protein | 184 | 9% helix, 48% strand | A7B557 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 171 | 0.57 | 0.81 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 807 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 6ER2 · Ruminococcus gnavus IT-sialidase CBM40 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7B557
- Elsewhere: RCSB PDB 6ER2 · PDBe 6ER2 · UniProt A7B557
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